TABLE 3

Topology analysis of deduced MG192 protein by different computational programs

ProgramTransmembrane regionaSurface orientationa
TM1TM2TM3InsideOutside
TMpred14–30302–325939–965NAcNA
TopPred11–31306–326947–967NANA
HMMTOP12–30NPb943–967NANA
TMHMM13–30NP939–9611–12, 962–105331–938
TOPCONS12–32NP946–9661–11, 967–105233–945
SCAMPI12–32NP947–9671–11, 968–105233–946
  • a Numbers represent the amino acid location of each protein segment based on the predicted MG192 amino acid sequence of the type strain G37 (GenBank accession no. NC_000908).

  • b NP, not present.

  • c NA, not available.