TABLE 4

Genes with increased transcript levels in the ptsG mutant T10TC291 relative to the parental control (WT) as determined by RNA-seq

LocusGene productRepliconNo. of reads (ptsG/WT)Fold difference (ptsG/WT)
BB_F0041VlsElp28-11,087/6317.3
BB_F01Arthritis-related protein (Arp)lp28-1722/5413.4
BB_0844Hypothetical proteinChromosome8,251/68212.1
BBC05Hypothetical proteincp913,007/1,17411.1
BB_O02Hypothetical proteincp32-711/111.0
BB_K07Hypothetical proteinlp362,776/27510.1
BB_F14Hypothetical proteinlp28-19/19.0
BB_H41Hypothetical proteinlp28-3532/677.9
BB_H02Hypothetical proteinlp28-315/27.5
BB_A36Lipoproteinlp5424,140/3,3347.2
BB_K50Protein P37lp366,396/1,0586.1
BB_K32Fibronectin-binding proteinlp365,600/1,0185.5
BB_M37BppCcp32-65/15.0
BB_A25DbpBlp5413,855/2,8044.9
BB_K52Protein p23lp36305/624.9
BB_M28MlpFcp32-6932/2044.6
BB_A24DbpAlp5416,087/3,6944.4
BB_A34Solute-binding proteinlp542,535/6364.0
BB_B19OspCcp26379,664/95,3254.0