TABLE 1

Genes upregulated in CP1ΩagrB compared to wild-type CP1

Locus tagGenBank accession no.GenePutative gene productFold changeq value (%)
CP4_0093AM596_00445Protein NT01CX_08242.174.64
CP4_0143AM596_00685Conserved hypothetical protein3.644.64
CP4_0362AM596_01730Protein of unknown function2.295.92
CP4_0600AM596_02865NAD-dependent 4-hydroxybutyrate dehydrogenase2.254.64
CP4_0623AM596_02980Alpha,alpha-phosphotrehalase18.140.00
CP4_0732AM596_03505Conserved hypothetical protein2.2210.72
CP4_0860AM596_04125Flavohemoprotein2.0410.72
CP4_0862AM596_04135Rubredoxin3.6611.51
CP4_0981AM596_04675eutPEthanolamine utilization protein, EutP2.754.64
CP4_0982AM596_04680eutVResponse regulator2.657.77
CP4_0985AM596_04695eutBEthanolamine ammonia-lyase, large subunit7.7212.41
CP4_0987AM596_04705eutLEthanolamine utilization protein EutL36.337.77
CP4_0988AM596_04710pduJPropanediol utilization protein11.437.77
CP4_0991AM596_04725eutTEthanolamine utilization cobalamin6.6811.51
CP4_0992AM596_04730pduLPropanediol utilization protein5.9312.41
CP4_1183AM596_05605Ferredoxin hydrogenase2.4811.51
CP4_1290AM596_06085Conserved hypothetical protein2.165.92
CP4_1391AM596_06550Putative endoribonuclease L-PSP2.797.77
CP4_1492AM596_07040Threonine dehydratase2.975.92
CP4_1587AM596_07465Magnesium transporter3.017.77
CP4_1648AM596_07745Phosphopyruvate hydratase5.330.00
CP4_1816AM596_08535PTS system, IIC component4.1710.72
CP4_1817AM596_08540Probable phosphotransferase enzyme IIB component2.964.64
CP4_1819AM596_085506-Phosphofructokinase77.670.00
CP4_1947AM596_09175Conserved hypothetical protein3.6212.41
CP4_2614AM596_12415CTP synthase3.257.77
CP4_2695AM596_12805Inosine-5′-monophosphate dehydrogenase3.347.77
CP4_2724AM596_12945Putative cadmium efflux system accessory protein2.447.77
CP4_2788AM596_13240Chain B X-ray structures16.2112.41
CP4_2799AM596_13295Thioredoxin reductase2.0610.72
CP4_2800AM596_13300Thioredoxin2.797.77
CP4_2802AM596_13310Phosphoenolpyruvate-protein phosphotransferase3.962.92
CP4_2909AM596_13825UDP-N-acetylmuramoylalanine-d-glutamate ligase9.487.77
CP4_2940AM596_13975Two-component sensor histidine kinase2.017.77