Table 2.

ORFs contained within the SRL PAI

ORFGenePosition (bp)Related proteina% SimilaritybProtein accession no.
1int619–1836Integrase CP4-57 (SlpA)49P32053 (U36840 )
2orf23535–2006Yfjl45P52124
3orf33812–3507AlpA (CP4-57)66P33997
4orf43868–5730No similarity
5orf57104–7697No similarity
6orf68449–8745Yfjl (frameshift)73P52125
7orf711582–10980LysR-like transcriptional regulator79P39376
8orf812300–12989Hypothetical protein in LysR-AraE63P03813
9orf913055–14353DcuA (anaerobic decarboxylate transporter)70P04539
10aadA116963–16172AadA1 (streptomycin resistance)95P04826
11oxa-117906–17076Oxa-1 (ampicillin resistance)99P13661
12intI118116–19129IntI199P09999
13tnpM19098–19682TnpM100P04162
14tnpR19808–20368TnpR98P04130
15tnpA20371–23337TnpA98BAA78805.1
16cat24641–23982Cat (chloramphenicol Resistance)98P00483
17orf1725759–26256YdjB79BAA78832.1
18orf1826365–26949JemC79AF162223
19tetR27553–26927TetR98P04483
20tetA(B)27632–28837TetA(B) (tetracycline resistance)99P02980
21tetC29543–28950TetC99BAA78836
22tetD29631–30047TetD100BAA78837
23orf2332594–31983CapU (hexosyltransferase homolog)99, 73AAD34405, AB011549
24orf2433389–32622Shf93, 92.3AF134403 , U61977
25orf2534749–35096Hypothetical ORF o13798S56511
26fecE36488–35721FecE100P15031
27fecD37445–36492FecD100P15029
28fecC38419–37442FecC100P15030
29fecB39339–38437FecB98P15028
30orf3040424–39384FecA precursor100P13036
31fecA41707–40421FecA100M63115
32fecR42747–41794FecR100P23485
33fecI43265–42744FecI100P23484
34orf3445173–46531Putative periplasmic protein (Campylobacter jejuni)52AL139076
35orf3548155–46770L001598AAC31494
36orf3648552–48205L001498AAC31493
37orf3748950–48549L001399AAC31492
38orf3849805–49284No similarity
39orf3950940–50404YfjJ55P52125
40orf4051855–51679Hha/YmoA (Yersinia enterocolitica)75, 75P23870 , P27720
41orf4152491–52769Vis (P4)53c
42orf4252858–53466No similarity
43orf4353637–53888No similarity
44orf4454534–54319No similarity
45orf4554667–55584No similarity
46orf4655669–56541YfjP, YeeP65, 97P52131 , P76359
47orf4756924–59761Ag43 (Flu)78P39180
48orf4860145–60705YfjQ88P52132
49orf4961390–61530YfjX, KlcA81, 51P52139 , P52603
50orf5061782–62273YfjY, YeeS80, 99p52140, P76362
51orf5162336–62557YeeT98P76363
52orf5262720–63094YeeU, YfjZ91, 75P76364 , P52141
53orf5363141–63515L0007, YeeV, YpjJ93, 87, 74AAC31485 .1, P76365 , O46953
54orf5463512–64003L0008, YeeW96, 77AAC31487 .1, P76366
55orf5564015–64212L000988AAC31488 .1
56orf5664297–64860L001085AAC31489 .1
57orf5764878–64651L001180AAC31490 .1
58orf5864929–65933IS/328 transposase (Y. enterocolitica)83O56897
59orf5966204–66452L001290AAC31491 .1
  • a Related proteins are from E. coli unless otherwise stated.

  • b At the amino acid level.

  • c —, data from reference52.